4,6-Dimethyl-2-(methylsulfonyl)pyrimidine: Properties & Lab Guide
4,6-Dimethyl-2-(methylsulfonyl)pyrimidine: Properties & Lab Guide
4,6-Dimethyl-2-(methylsulfonyl)pyrimidine is a versatile heterocyclic building block widely employed in medicinal chemistry and pharmaceutical synthesis as an electrophilic pyrimidine scaffold amenable to nucleophilic aromatic substitution (SNAr) at the C-2 position.
- CAS Number
- 19269-28-4
- Molecular Formula
- C7H10N2O2S
- Molecular Weight
- 186.23 g/mol
- Key Functional Group
- Methylsulfonyl (–SO2CH3) at C-2; methyl groups at C-4 and C-6
- Primary Synthetic Use
- SNAr displacement of the methylsulfonyl leaving group with N-, O-, and C-nucleophiles
- Recommended Storage
- Cool, dry, well-ventilated area; away from oxidising agents and moisture
- SKU
- D155140
Chemical Identity and Physical Properties
4,6-Dimethyl-2-(methylsulfonyl)pyrimidine (CAS 19269-28-4; SKU D155140) is a six-membered nitrogen heterocycle bearing two ring nitrogen atoms at positions 1 and 3, methyl substituents at positions 4 and 6, and a methylsulfonyl group (–SO2CH3) at position 2. Its molecular formula is C7H10N2O2S with a molecular weight of 186.23 g/mol.
The compound typically presents as a white to off-white crystalline solid at room temperature. The electron-withdrawing sulfonyl moiety, flanked by the two ring nitrogen atoms, renders C-2 highly electrophilic, making the methylsulfonyl group an excellent leaving group in nucleophilic aromatic substitution reactions. The two methyl groups at C-4 and C-6 contribute steric and electronic modulation of ring reactivity and can themselves serve as handles for further functionalization via benzylic deprotonation or oxidation.
Note: Precise melting point, boiling point, solubility data, and appearance specifications should be confirmed from the Aladdin Scientific certificate of analysis (CoA) supplied with SKU D155140, as these values may vary by lot.
Synthetic Applications and Reactivity
The primary synthetic value of 4,6-Dimethyl-2-(methylsulfonyl)pyrimidine lies in its role as an activated electrophilic pyrimidine in nucleophilic aromatic substitution (SNAr). The –SO2CH3 group at C-2 is activated by the flanking ring nitrogens and departs as methanesulfinate upon reaction with nucleophiles. This strategy is widely applied in the preparation of:
- 2-Aminopyrimidines: Reaction with primary or secondary amines under mild conditions affords 2-amino-4,6-dimethylpyrimidine derivatives, key scaffolds in kinase inhibitor design and antimicrobial research.
- 2-Alkoxy- and 2-aryloxypyrimidines: Alkoxide or phenoxide nucleophiles displace the sulfonyl group to give ether-linked pyrimidine products relevant to agrochemical and pharmaceutical programs.
- C–C Bond Formation: Stabilised carbanions (e.g., malonates, active methylene compounds) can attack C-2, enabling carbon–carbon bond formation for complex molecule synthesis.
Additionally, the methyl groups at C-4 and C-6 can be exploited for Knoevenagel-type condensations or directed metalation strategies, expanding the utility of this scaffold beyond simple SNAr chemistry.
Review flag: Specific reaction conditions (temperature, solvent, base, yield data) cited above are based on general textbook knowledge of activated pyrimidine SNAr chemistry. Researchers should consult primary literature for optimised protocols for specific transformations.
Safe Handling, Storage, and Disposal
Personal Protective Equipment (PPE): Handle 4,6-Dimethyl-2-(methylsulfonyl)pyrimidine wearing appropriate nitrile gloves, safety glasses or goggles, and a laboratory coat. Where dust or aerosols may be generated, use a half-face respirator with an appropriate particulate filter or work in a fume hood.
Storage: Store the compound in a tightly sealed container in a cool (15–25 °C), dry, well-ventilated area away from strong oxidising agents, strong acids, and moisture. Keep away from sources of ignition. Verify recommended storage temperature range on the CoA or product label supplied with SKU D155140.
Stability: The compound is expected to be stable under recommended storage conditions; however, prolonged exposure to moisture or high humidity may cause hydrolysis of the sulfonyl group or other degradation. Confirm stability data from the CoA.
Spill Management: Collect solid spills using non-sparking tools into a suitable, labelled waste container. Avoid generating dust. Prevent contamination of drains and waterways.
Disposal: Dispose of in accordance with local, regional, and national chemical waste regulations. Do not dispose of via municipal sewage. Consult your institution's Environmental Health and Safety (EHS) office for guidance.
Note: Always consult the current Safety Data Sheet (SDS) for SKU D155140 before use. Specific hazard classifications, GHS pictograms, and first-aid measures are detailed therein.
Quality, Purity, and Procurement Guidance
For research applications demanding high reproducibility—such as medicinal chemistry lead optimisation, structure–activity relationship (SAR) studies, or reference standard preparation—the purity of 4,6-Dimethyl-2-(methylsulfonyl)pyrimidine is critical. Aladdin Scientific supplies SKU D155140 with lot-specific certificates of analysis (CoA) detailing purity determination methods (typically HPLC or GC), appearance, and identity confirmation (e.g., NMR, MS).
Procurement checklist for laboratory managers:
- Request a CoA and, where required, an SDS before placing an order.
- Confirm purity specification meets your assay threshold (commonly ≥97% or ≥98% for synthetic applications).
- Verify packaging size options (milligram to gram scale) available for SKU D155140 to match consumption and minimise freeze–thaw or open-container cycles.
- For regulated research environments, confirm compliance documentation requirements with Aladdin Scientific customer service.
Note: Specific purity grades and available pack sizes should be confirmed directly on the Aladdin Scientific product page for SKU D155140 or by contacting customer support, as these may be updated.
Frequently asked questions
What makes the methylsulfonyl group at C-2 a good leaving group in SNAr reactions?
The two ring nitrogen atoms of the pyrimidine ring are strongly electron-withdrawing, stabilising the Meisenheimer complex intermediate formed when a nucleophile attacks C-2. This activation, combined with methanesulfinate being a relatively stable anion and therefore a good leaving group, makes displacement facile under mild to moderate reaction conditions. The 4,6-methyl groups provide additional steric and electronic context but do not significantly impede C-2 reactivity.
Which solvents are typically suitable for reactions involving this compound?
Polar aprotic solvents such as dimethylformamide (DMF), dimethyl sulfoxide (DMSO), acetonitrile, and tetrahydrofuran (THF) are commonly used for SNAr reactions with this class of activated pyrimidines, as they stabilise charged intermediates without protonating nucleophiles. Solvent choice should be optimised empirically for each specific nucleophile and target product. Always verify compatibility with your specific reaction conditions using primary literature.
How should I confirm the identity and purity of SKU D155140 upon receipt?
Upon receipt, cross-reference the lot number on the packaging with the certificate of analysis (CoA) provided by Aladdin Scientific. Identity can be confirmed by comparing 1H NMR spectral data or mass spectrometry fragmentation patterns against published or in-house reference data. Purity is typically assessed by HPLC or GC as detailed on the CoA. If discrepancies are found, contact Aladdin Scientific customer service immediately.
Can the 4,6-dimethyl groups be further functionalised?
Yes. The methyl groups at C-4 and C-6 are benzylic in character relative to the electron-poor pyrimidine ring, making them susceptible to deprotonation by strong bases (e.g., LDA, NaH) to generate stabilised carbanions for alkylation or condensation reactions. They can also be oxidised to carboxylic acids or aldehydes under appropriate conditions, significantly expanding the structural diversity accessible from this scaffold.
References
- Clayden, J.; Greeves, N.; Warren, S. Organic Chemistry, 2nd ed.; Oxford University Press: Oxford, 2012. Chapter on nucleophilic aromatic substitution.
- Manske, R. H. F.; Kulka, M. Organic Reactions, Vol. 7: The Chichibabin Amination and Related Reactions of Nitrogen Heterocycles. Wiley, 1953. (General reference for pyrimidine amination chemistry.)
- Aladdin Scientific Certificate of Analysis, SKU D155140, 4,6-Dimethyl-2-(methylsulfonyl)pyrimidine. Aladdin Scientific, Shanghai. (Lot-specific; request from supplier.)
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