5-Bromo-2-(chloromethyl)pyridine HCl: FAQs & Lab Guide
5-Bromo-2-(chloromethyl)pyridine HCl: FAQs & Lab Guide
5-Bromo-2-(chloromethyl)pyridine hydrochloride is a bifunctional halopyridine building block widely used in medicinal chemistry and heterocyclic synthesis, offering both an aryl bromide and a reactive benzyl chloride handle on a single pyridine scaffold.
- Chemical Name
- 5-Bromo-2-(chloromethyl)pyridine hydrochloride
- SKU / Catalog Number
- B733676
- Molecular Formula
- C6H5BrClN · HCl
- Key Functional Groups
- Aryl bromide (C-5), benzyl chloride (C-2 methylene), pyridine nitrogen
- Typical Storage Condition
- Cool, dry, well-ventilated area; away from moisture and incompatible materials
- Primary Application
- Synthetic building block for N-alkylation, O-alkylation, cross-coupling reactions, and pharmaceutical intermediate synthesis
What Is 5-Bromo-2-(chloromethyl)pyridine Hydrochloride?
5-Bromo-2-(chloromethyl)pyridine hydrochloride (Aladdin SKU B733676) is a heteroaromatic halide supplied as its stable hydrochloride salt. The free base contains a pyridine ring bearing a bromine substituent at the 5-position and a chloromethyl (–CH2Cl) group at the 2-position.
The hydrochloride salt form improves bench stability relative to the free base, reducing spontaneous decomposition and making the compound easier to weigh and handle in air for short periods. Researchers should nonetheless handle the material promptly and return it to sealed storage after use.
Because the molecule carries two distinct electrophilic sites—the aryl C–Br bond amenable to palladium-catalysed cross-coupling and the highly reactive benzyl chloride—it serves as a versatile bifunctional linker or intermediate in multi-step organic synthesis.
How Should This Reagent Be Stored and Handled Safely?
Storage: Store in a tightly sealed container in a cool, dry, and well-ventilated location. Protect from moisture, as the hygroscopic hydrochloride salt can absorb water, potentially affecting purity and reactivity. Refrigerated storage (2–8 °C) is commonly recommended for long-term preservation; confirm the specific recommendation on the Certificate of Analysis (CoA) supplied with your lot.
Personal Protective Equipment (PPE): Wear appropriate chemical-resistant gloves, laboratory coat, and eye protection when handling this compound. The benzyl chloride moiety is a potent alkylating agent and potential lachrymator; all operations should be conducted in a well-ventilated fume hood.
Incompatibilities: Keep away from strong bases, nucleophiles, and oxidising agents, which can trigger uncontrolled alkylation or decomposition. Consult the Safety Data Sheet (SDS) available from Aladdin Scientific for full hazard information before use.
What Are the Key Synthetic Applications?
N- and O-Alkylation: The electrophilic benzyl chloride group reacts readily with amines, alcohols, thiols, and other nucleophiles under mild base conditions, making B733676 a convenient reagent for attaching the 5-bromopyridin-2-ylmethyl pharmacophore to target scaffolds.
Palladium-Catalysed Cross-Coupling: The aryl bromide at C-5 undergoes standard Suzuki–Miyaura, Negishi, Buchwald–Hartwig, and related cross-coupling reactions, enabling introduction of aryl, heteroaryl, alkyl, or amino groups while the chloromethyl handle is preserved or orthogonally protected.
Pharmaceutical and Agrochemical Intermediates: Pyridine-based building blocks bearing halogens at defined positions are broadly used in the synthesis of kinase inhibitors, CNS-active compounds, and crop-protection agents. The dual-halogen functionality of this compound allows sequential derivatisation in convergent synthesis strategies.
Heterocycle Construction: Intramolecular cyclisation reactions exploiting both the benzyl chloride and the ring nitrogen or an introduced nucleophile can afford fused bicyclic heterocycles of medicinal interest.
Solubility, Purity, and Analytical Considerations
Solubility: As a hydrochloride salt, this compound shows improved water solubility compared to the free base. It is also soluble in polar organic solvents such as DMSO, DMF, and methanol. Solubility in non-polar solvents is limited. Always confirm solubility under your specific reaction conditions before scale-up.
Purity Verification: Each lot of B733676 is accompanied by a Certificate of Analysis (CoA) stating purity by HPLC or other appropriate method. Researchers requiring additional characterisation may employ 1H NMR, 13C NMR, or mass spectrometry. Note that the HCl salt proton appears in the low-field region of the 1H NMR spectrum and should be accounted for in stoichiometric calculations.
Moisture Sensitivity: Opened containers should be re-sealed promptly and stored with desiccant to prevent hydrolysis of the benzyl chloride to the corresponding alcohol, which would reduce reagent potency and introduce impurities.
Ordering, Availability, and Technical Support
How to Order: 5-Bromo-2-(chloromethyl)pyridine hydrochloride is available from Aladdin Scientific under catalog number B733676. Place orders through the Aladdin Scientific website, your regional distributor, or by contacting the Aladdin sales team directly. Bulk or custom quantities may be available upon request.
Documentation: Safety Data Sheets (SDS) and Certificates of Analysis (CoA) for specific lot numbers are available for download on the product page or by request from customer service. Always review the SDS before first use.
Technical Inquiries: For questions about analytical data, synthetic protocols, or custom synthesis services involving this building block, contact Aladdin Scientific technical support. Our team can assist with solubility screening, formulation advice, and referrals to application literature.
Frequently asked questions
What is the difference between 5-Bromo-2-(chloromethyl)pyridine and its hydrochloride salt?
The free base form is the neutral molecule, whereas the hydrochloride salt is formed by protonation of the pyridine nitrogen with hydrochloric acid. The salt form (B733676) offers improved stability and ease of handling compared to the free base, and its molecular weight is higher by approximately 36.5 g/mol (the mass of HCl). Researchers must account for this difference when calculating molar equivalents in reactions.
Which cross-coupling reactions are compatible with the aryl bromide in this compound?
The aryl C–Br bond at C-5 of the pyridine ring is compatible with a range of palladium-catalysed cross-coupling reactions, including Suzuki–Miyaura (with boronic acids/esters), Negishi (with organozinc reagents), Stille (with organostannanes), and Buchwald–Hartwig amination. Standard coupling conditions using Pd(PPh3)4 or Pd(dppf)Cl2 in the presence of appropriate base and solvent are typically applicable. The reactive benzyl chloride should be protected or reacted first if selectivity is required.
How should I handle the benzyl chloride reactivity to avoid unwanted side reactions?
The –CH2Cl group is highly electrophilic and will alkylate nucleophilic functional groups in solvents, reagents, and the substrate itself if not managed carefully. Use non-nucleophilic solvents (e.g., DCM, THF, acetonitrile) and non-nucleophilic bases (e.g., Cs2CO3, K2CO3, DIPEA) when working with the free benzyl chloride. Reactions should be performed at controlled temperatures, and reaction progress should be monitored by TLC or HPLC to minimise over-alkylation.
Is B733676 suitable for use in aqueous reaction conditions?
The hydrochloride salt has reasonable water solubility, but the benzyl chloride group is susceptible to hydrolysis in aqueous media, particularly under acidic or basic conditions. Prolonged exposure to water can generate the corresponding alcohol (5-bromopyridin-2-yl)methanol and HCl, reducing the effective concentration of the alkylating agent. Aqueous conditions should be used with caution, and reaction times minimised to limit hydrolysis.
What documentation can I request for this product from Aladdin Scientific?
For B733676, customers can request or download the Certificate of Analysis (CoA) for their specific lot number, the Safety Data Sheet (SDS), and the product specification sheet from the Aladdin Scientific website or customer service. The CoA confirms identity, purity, and physical characteristics. The SDS provides full hazard, first-aid, and disposal information required for compliance and safe laboratory use.
References
- Aladdin Scientific product page for 5-Bromo-2-(chloromethyl)pyridine hydrochloride, SKU B733676.
- General reference: March, J. Advanced Organic Chemistry: Reactions, Mechanisms, and Structure. Wiley. (Textbook-level background on alkylation reactions and cross-coupling chemistry.)
- Miyaura, N.; Suzuki, A. Palladium-Catalyzed Cross-Coupling Reactions of Organoboron Compounds. Chemical Reviews, 1995, 95(7), 2457–2483. doi:10.1021/cr00039a007
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