6-Bromo-2,4-dichloropyrido[2,3-d]pyrimidine: Handling & Use Guide
6-Bromo-2,4-dichloropyrido[2,3-d]pyrimidine: Handling & Use Guide
6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine is a trihalogenated bicyclic heteroaromatic building block widely employed in medicinal chemistry and drug discovery programs, particularly as a versatile scaffold for the synthesis of kinase inhibitors and other bioactive heterocyclic compounds.
- Chemical Name
- 6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine
- SKU
- B172823
- Molecular Formula
- C₇H₂BrCl₂N₃
- Molecular Weight
- 293.92 g/mol (calculated)
- Compound Class
- Trihalogenated pyrido[2,3-d]pyrimidine
- Primary Application
- Intermediate for kinase inhibitor and heterocyclic drug synthesis
- Recommended Storage
- Cool, dry, well-ventilated area; protect from moisture and light
Chemical Identity and Structural Features
6-Bromo-2,4-dichloropyrido[2,3-d]pyrimidine (SKU B172823) is a fused bicyclic heteroaromatic compound consisting of a pyrimidine ring annulated with a pyridine ring in the [2,3-d] orientation. The molecule bears three leaving-group-capable halogen substituents: two chlorine atoms at the 2- and 4-positions of the pyrimidine ring and one bromine atom at the 6-position of the pyridine ring.
This strategic pattern of halogenation endows the scaffold with pronounced electrophilic character at multiple sites, enabling sequential, chemoselective functionalization. The 4-chloro position is typically the most electrophilic and reactive toward nucleophilic aromatic substitution (SNAr), followed by the 2-chloro position, while the 6-bromo substituent is ideally suited for transition-metal-catalyzed cross-coupling reactions such as Suzuki–Miyaura, Buchwald–Hartwig, and Negishi couplings. This orthogonal reactivity profile makes the compound an exceptionally versatile synthon in multi-step synthetic routes.
Recommended Storage and Handling Procedures
Storage: Store 6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine in a tightly sealed container in a cool, dry, and well-ventilated location, away from moisture, direct light, and incompatible materials such as strong bases, strong oxidizers, and reactive nucleophiles. Desiccant packs are recommended when storing opened containers. Confirm exact recommended temperature range and long-term stability data from the product certificate of analysis (CoA).
Personal Protective Equipment (PPE): Researchers should wear appropriate PPE including nitrile gloves, safety goggles, and a laboratory coat when handling this compound. Operations that may generate dust or aerosols should be conducted inside a chemical fume hood.
Weighing and Dissolution: Weigh quantities in a fume hood to minimize inhalation exposure. The compound is soluble in common organic solvents including dimethyl sulfoxide (DMSO), dimethylformamide (DMF), dichloromethane (DCM), and tetrahydrofuran (THF). Avoid prolonged exposure to protic solvents or aqueous systems without a co-solvent, as hydrolysis of the chloro substituents may occur under some conditions.
Waste Disposal: Dispose of all waste materials in accordance with institutional, local, and national regulations for halogenated organic waste. Do not pour solutions containing this compound down the drain.
Applications in Medicinal Chemistry and Drug Discovery
The pyrido[2,3-d]pyrimidine core is a privileged scaffold in drug discovery, particularly for the design and synthesis of small-molecule kinase inhibitors. The fused bicyclic nitrogen-rich framework mimics purine and can bind effectively within ATP-binding pockets of protein kinases. 6-Bromo-2,4-dichloropyrido[2,3-d]pyrimidine serves as a key starting material or advanced intermediate for constructing such inhibitors.
Sequential Functionalization Strategy: A typical synthetic approach exploits the differential reactivity of the three halogen substituents. First, selective SNAr at the 4-position with an amine nucleophile (e.g., an aniline or aliphatic amine) installs an amino group that can serve as a hinge-binding motif in kinase active sites. Second, further SNAr or nucleophilic substitution at the 2-position introduces a second amine or other nucleophile for selectivity optimization. Third, the 6-bromo group is engaged in palladium-catalyzed cross-coupling to introduce aryl, heteroaryl, vinyl, or alkyl fragments that project into hydrophobic regions of the binding site.
Relevant Therapeutic Areas: Compounds derived from this scaffold have been investigated in the context of oncology (targeting receptor tyrosine kinases and non-receptor kinases), inflammatory disease, and antiviral research. Specific biological activity data for derivatives should be verified against peer-reviewed primary literature.
Quality, Purity, and Regulatory Considerations
Purity Verification: Aladdin Scientific supplies 6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine (SKU B172823) with a certificate of analysis (CoA) that documents purity as determined by analytical methods such as HPLC and/or NMR. Researchers should review the CoA for each lot prior to use, particularly for sensitive biological assays where impurities may confound results.
Structural Confirmation: Confirm compound identity using ¹H NMR, ¹³C NMR, and mass spectrometry before use in critical experiments. Characteristic NMR signals will reflect the aromatic protons of the pyrido[2,3-d]pyrimidine scaffold and the absence of signals corresponding to residual starting materials.
Regulatory Status: This compound is intended for research use only and is not approved for use in humans, animals, or food products. Researchers are responsible for compliance with all applicable institutional biosafety, chemical safety, and import/export regulations governing halogenated heterocyclic research chemicals.
Lot-to-Lot Consistency: When reproducibility across experiments is essential, researchers should request lot-specific CoA documentation and, where possible, reserve sufficient material from a single lot for a complete study series.
Frequently asked questions
What makes 6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine useful as a medicinal chemistry building block?
The compound bears three orthogonally reactive halogen substituents on a drug-like bicyclic heteroaromatic scaffold. The two chlorines at positions 2 and 4 undergo selective nucleophilic aromatic substitution with amines and other nucleophiles, while the bromine at position 6 is optimally suited for palladium-catalyzed cross-coupling reactions. This combination allows chemists to introduce up to three structurally distinct fragments in a controlled, sequential manner, making it highly efficient for rapid analog synthesis and structure–activity relationship (SAR) exploration.
What solvents are recommended for dissolving 6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine?
This compound is readily soluble in common polar aprotic organic solvents including DMSO, DMF, DCM, and THF. Protic solvents such as water, methanol, or ethanol should be used with caution because the electrophilic chloro positions can be susceptible to solvolysis under certain conditions. For stock solution preparation in biological assays, DMSO is generally preferred due to its miscibility with aqueous buffers and its compatibility with most assay systems.
How should I confirm the identity and purity of this compound before use in a critical experiment?
Verify identity using ¹H NMR and mass spectrometry, cross-referencing observed spectral data with expected values for the molecular formula C₇H₂BrCl₂N₃. Purity can be assessed by HPLC with UV detection. The certificate of analysis (CoA) provided by Aladdin Scientific with SKU B172823 documents lot-specific analytical data and should be reviewed before commencing experiments, particularly in biological screening or when comparative SAR data are being generated.
Are there any particular safety precautions specific to this compound?
As a halogenated heteroaromatic compound, 6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine should be handled with standard chemical laboratory precautions. Always work in a fume hood, wear nitrile gloves, safety glasses, and a lab coat. Avoid inhalation of dust and contact with skin or eyes. Consult the Safety Data Sheet (SDS) for this product for comprehensive hazard information, first-aid measures, and disposal guidelines specific to this compound.
References
- Aladdin Scientific Product Page: 6-bromo-2,4-dichloropyrido[2,3-d]pyrimidine, SKU B172823. Certificate of Analysis and Safety Data Sheet available on request.
- Textbook reference: March's Advanced Organic Chemistry: Reactions, Mechanisms, and Structure. Nucleophilic Aromatic Substitution and Cross-Coupling Reactions chapters. General principles applied to halogenated heteroaromatics.
- General review: Pyrido[2,3-d]pyrimidine scaffold in kinase inhibitor design. Refer to primary medicinal chemistry literature for specific derivative biological activity data.
Products are supplied for research and development use only. Not for use in humans, animals, diagnosis, or therapy.
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