技术文章

Bicyclo[1.1.1]pentane-1,3-dicarboxylic Acid: Properties & Lab Use

Bicyclo[1.1.1]pentane-1,3-dicarboxylic acid is a strained, cage-like dicarboxylic acid that serves as a versatile building block and para-phenyl bioisostere in modern medicinal chemistry and drug discovery.

IUPAC Name
Bicyclo[1.1.1]pentane-1,3-dicarboxylic acid
Molecular Formula
C7H10O4
Molecular Weight
158.15 g/mol
Core Structure
Bicyclo[1.1.1]pentane (BCP) cage with carboxylic acid groups at C-1 and C-3
Primary Application
Para-phenyl / tert-butyl bioisostere in drug discovery; difunctional linker for peptide and material chemistry
CAS Number
Needs review — not provided in source material
Storage Recommendation
Store in a cool, dry, well-ventilated area away from moisture and incompatible materials; specific conditions need verification

What Is Bicyclo[1.1.1]pentane-1,3-dicarboxylic Acid?

Bicyclo[1.1.1]pentane-1,3-dicarboxylic acid (BCP diacid) belongs to the family of bicyclo[1.1.1]pentane (BCP) compounds — among the smallest and most geometrically strained carbocyclic cage systems in organic chemistry. The BCP scaffold consists of three methylene bridges connecting two bridgehead carbons, generating a rigid, three-dimensional architecture with a C–C distance of approximately 1.87 Å between the bridgehead atoms.

In this dicarboxylic acid derivative, both bridgehead positions (C-1 and C-3) bear a carboxylic acid (–COOH) group, making the molecule a symmetric, bifunctional reagent. The enforced anti relationship between the two acid groups and the high degree of sp3 character at the bridgeheads distinguish BCP diacid sharply from aromatic or linear aliphatic diacids.

The compound has attracted intense interest in pharmaceutical and agrochemical research as a building block that imparts favorable physicochemical properties — notably improved aqueous solubility, metabolic stability, and reduced lipophilicity compared to the aromatic analogues it replaces.

Physicochemical Properties and Structural Significance

The BCP cage imposes strict geometric constraints. The bridgehead C–H bonds are aligned along the molecular axis, and the three-fold symmetry of the ring system means that substituents at C-1 and C-3 adopt a perfectly linear, rod-like arrangement. This geometry closely mimics the vector presented by a para-disubstituted benzene ring, which is the primary basis for BCP's role as a para-phenyl bioisostere.

Key physicochemical attributes of BCP-based compounds relative to their aromatic counterparts include:

  • Increased aqueous solubility: the absence of a planar aromatic ring reduces crystal-packing energy and π–π stacking, often resulting in higher solubility.
  • Lower logP: BCP is more hydrophilic than benzene or cyclohexane analogues, supporting better absorption and distribution profiles.
  • Improved metabolic stability: the strained C–C bonds of the BCP cage are not susceptible to cytochrome P450-mediated aromatic hydroxylation.
  • Rigidity: conformational restriction reduces the entropic penalty upon target binding, potentially improving binding affinity.

The dicarboxylic acid functionality provides two handles for further chemical elaboration — both can be selectively or simultaneously converted to esters, amides, acid chlorides, or other activated derivatives, enabling the construction of diverse linker architectures.

Research and Synthetic Applications

BCP-1,3-dicarboxylic acid serves as a pivotal intermediate in multiple research contexts:

1. Medicinal Chemistry — Bioisosteric Replacement

The compound is frequently employed to replace a para-substituted benzene ring or a tert-butyl group within a lead compound. By substituting the aromatic core with the BCP diacid-derived linker, medicinal chemists can explore changes in potency, selectivity, ADME properties, and safety without fundamentally altering the pharmacophoric distance between two key functional groups.

2. Peptide and Peptidomimetic Chemistry

Both carboxylic acids can be coupled to amine-bearing fragments using standard peptide coupling reagents (e.g., HATU, DIC/HOBt, EDC). The rigid spacer introduced by the BCP unit constrains peptide backbone geometry, enabling the design of conformationally restricted peptidomimetics with improved protease resistance.

3. Polymer and Materials Science

As a strained difunctional monomer, BCP diacid can be incorporated into polyamides, polyesters, or coordination polymers. The rigidity and three-dimensional shape of the BCP unit can impart unique mechanical and transport properties to the resulting materials.

4. Probe and Linker Synthesis

In chemical biology, BCP diacid is used to construct bifunctional probes, PROTACs, and other bifunctional degrader molecules where a rigid, metabolically stable linker of defined length is required.

Handling, Safety, and Storage Guidelines

While BCP-1,3-dicarboxylic acid is not classified as acutely hazardous under standard laboratory conditions, researchers should follow good laboratory practice (GLP) when handling all research-grade reagents:

  • Personal Protective Equipment (PPE): Wear appropriate gloves (nitrile recommended), safety glasses, and a laboratory coat. Use a dust mask or work in a fume hood if handling powders to avoid inhalation of fine particles.
  • Storage: Store in a tightly sealed container in a cool (typically room temperature or below), dry, and well-ventilated location away from direct sunlight and moisture. Verify specific storage temperature requirements from the product Certificate of Analysis (CoA).
  • Stability: As a carboxylic acid, the compound should be kept away from strong bases, strong oxidising agents, and reactive amines to prevent unintended salt formation or amide coupling in storage.
  • Disposal: Dispose of waste according to applicable local, regional, and national regulations. Do not pour down drains without treatment.
  • First Aid: In case of skin or eye contact, flush thoroughly with water. Seek medical advice if irritation persists. Consult the Safety Data Sheet (SDS) supplied with the product for comprehensive hazard information.

Note: Always consult the product-specific SDS and CoA provided by Aladdin Scientific before use. Specific hazard classifications and storage conditions must be confirmed from official documentation.

Ordering and Specification Information

Aladdin Scientific offers Bicyclo[1.1.1]pentane-1,3-dicarboxylic acid under SKU B176816. When ordering, researchers and procurement teams should consider the following:

  • Purity: Confirm the lot-specific purity from the Certificate of Analysis (CoA). For demanding synthetic applications, high-purity (≥95% or ≥98%) grades are recommended.
  • Quantity: BCP diacid is typically available in milligram to gram quantities. Assess your project scale and order accordingly to minimise freeze-thaw cycles and prolonged storage.
  • Documentation: A full CoA, SDS, and structural confirmation data (NMR, HPLC, or MS) should be requested and reviewed prior to use in regulated research environments.
  • Regulatory considerations: BCP-1,3-dicarboxylic acid is a research reagent intended for laboratory use only and is not for therapeutic, veterinary, or food-additive use.

For bulk inquiries, custom packaging, or technical support, contact Aladdin Scientific directly through the product page or customer service channels.

Frequently asked questions

What makes BCP-1,3-dicarboxylic acid useful as a bioisostere?

The bicyclo[1.1.1]pentane scaffold presents the two bridgehead substituents in a geometry that closely mimics a para-disubstituted benzene ring, maintaining a similar pharmacophoric vector. Replacing an arene with BCP typically improves aqueous solubility, reduces lipophilicity, and removes susceptibility to aromatic oxidation by cytochrome P450 enzymes, all of which are desirable properties in drug candidates.

Can both carboxylic acid groups of BCP diacid be functionalized independently?

In principle, selective mono-functionalization is possible using protective group strategies or by exploiting differences in reactivity under controlled conditions. However, because the molecule is symmetric (C1 and C3 are chemically equivalent), achieving true selectivity requires careful reaction design. Both groups can be simultaneously functionalized using excess coupling reagent, which is the more common approach in linker synthesis.

How should BCP-1,3-dicarboxylic acid be dissolved for use in reactions?

BCP diacid is generally soluble in polar aprotic solvents such as DMF and DMSO, as well as in aqueous base (e.g., dilute NaOH or K2CO3 solution) due to its carboxylic acid groups. Solubility in less polar organic solvents such as dichloromethane or ethyl acetate may be limited. Verify solubility experimentally for your specific conditions, and consult the CoA or SDS for additional guidance.

Is BCP-1,3-dicarboxylic acid suitable for solid-phase peptide synthesis (SPPS)?

Yes, BCP-1,3-dicarboxylic acid can in principle be incorporated into SPPS workflows as a rigid, bifunctional spacer. Standard Fmoc- or Boc-based SPPS coupling protocols using reagents such as HATU or HBTU are applicable. Reaction conditions should be optimized for the specific resin and sequence, and compatibility testing is recommended before large-scale synthesis.

References

  1. Stepan, A. F. et al. Application of the Bicyclo[1.1.1]pentane Motif as a Nonclassical Phenyl Ring Bioisostere in the Design of a Potent and Orally Active γ-Secretase Inhibitor. Journal of Medicinal Chemistry, 2012. doi:10.1021/jm300166q
  2. Nicolaou, K. C.; Rigol, S. The Role of Organic Synthesis in the Emergence and Development of Molecular Medicine. Chemical Society Reviews, 2018.
  3. Measom, N. D. et al. Investigation of a Bicyclo[1.1.1]pentane as a Phenyl Bioisostere in a Series of Antimicrobial Agents. ACS Medicinal Chemistry Letters, 2017. doi:10.1021/acsmedchemlett.6b00504
  4. Gianatassio, R. et al. Strain-release amination. Science, 2016. doi:10.1126/science.aaf6326

Products are supplied for research and development use only. Not for use in humans, animals, diagnosis, or therapy.

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阿拉丁科学.《Bicyclo[1.1.1]pentane-1,3-dicarboxylic Acid: Properties & Lab Use》. 阿拉丁知识库,更新于 2026年10月6日。 https://www.aladdin-e.com/zh_cn/faqs/bicyclo-1-1-1-pentane-1-3-dicarboxylic-acid-guideline-en.html
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