N-(2-Aminoethyl)glycine: Properties, Uses & PNA Synthesis
N-(2-Aminoethyl)glycine: Properties, Uses & PNA Synthesis
N-(2-Aminoethyl)glycine is a bifunctional amino acid derivative that serves as the universal backbone monomer for the chemical synthesis of peptide nucleic acids (PNAs), enabling researchers to build sequence-specific nucleic acid mimics with superior hybridization properties.
- Chemical Name
- N-(2-Aminoethyl)glycine
- Molecular Formula
- C4H10N2O2
- Molecular Weight
- 118.13 g/mol
- CAS Number
- Not confirmed in source material — see review flag
- Primary Application
- Backbone monomer in peptide nucleic acid (PNA) synthesis
- Functional Groups
- Primary amine, secondary amine, carboxylic acid
- Solubility
- Soluble in water; solubility in organic solvents varies — see review flag
Chemical Identity and Structure
N-(2-Aminoethyl)glycine (AEG) is a small, bifunctional molecule that combines the structural features of an ethylenediamine unit with a glycine residue. Its molecular formula is C4H10N2O2, giving a molecular weight of approximately 118.13 g/mol. The molecule contains three key nitrogen/oxygen functionalities: a terminal primary amine (–NH2), a secondary amine linking the ethylene bridge to the acetic acid moiety (–NH–), and a carboxylic acid group (–COOH).
This arrangement of functional groups endows AEG with considerable chemical versatility. The primary amine is available for acylation reactions used in stepwise PNA monomer coupling, while the secondary amine forms the nitrogen center of the repeating PNA backbone unit. The carboxylic acid terminus enables chain elongation through standard amide-bond-forming chemistries. Because AEG is achiral at its backbone, PNA oligomers assembled from it lack the chirality inherent in natural DNA and RNA sugar-phosphate backbones, which has important consequences for hybridization thermodynamics.
Role in Peptide Nucleic Acid (PNA) Synthesis
Peptide nucleic acids are synthetic nucleic acid analogues in which the natural deoxyribose-phosphate backbone is replaced by a pseudo-peptide scaffold composed of repeating N-(2-aminoethyl)glycine units. Each AEG unit is functionalized at its secondary nitrogen with a nucleobase-acetic acid side chain, recreating the base-stacking and hydrogen-bonding capacity needed for Watson-Crick hybridization to complementary DNA or RNA strands.
In solid-phase PNA synthesis, Boc- or Fmoc-protected AEG-derived monomers are coupled sequentially to a resin-bound growing chain, much like standard Fmoc peptide synthesis. Because the AEG backbone is uncharged at physiological pH — unlike the negatively charged phosphodiester backbone of natural nucleic acids — PNA:DNA and PNA:RNA duplexes are generally more thermally stable, with higher melting temperatures compared with equivalent DNA:DNA duplexes of the same sequence. This enhanced affinity makes PNA tools powerful for antisense, antigene, diagnostic, and biosensor applications.
N-(2-Aminoethyl)glycine (SKU: A124646) from Aladdin Scientific provides researchers with the fundamental building block needed to prepare custom PNA monomers or to explore backbone-modification strategies in nucleic acid chemistry research.
Research Applications Beyond PNA Backbone Assembly
While AEG is most widely recognized as the PNA backbone precursor, its bifunctional amine-acid character makes it useful in a range of other research contexts. In coordination chemistry and chelation studies, the secondary amine and carboxylate of AEG can participate in metal-ion complexation, offering a simple scaffold for exploring nitrogen/oxygen donor ligands. Similarly, AEG has been evaluated as a building block in combinatorial chemistry libraries targeting peptidomimetic or small-molecule drug discovery programs.
In bioconjugation and linker chemistry, the free primary amine of AEG can be selectively reacted with NHS esters, isocyanates, or aldehydes (via reductive amination) to install functional handles on surfaces, nanoparticles, or biomolecules while the carboxylate end remains available for further coupling. This two-point reactivity also makes AEG a candidate spacer or bifunctional crosslinker in the preparation of labeled probes and affinity reagents.
Researchers working on modified oligonucleotide backbones — including those studying morpholino, phosphoramidate, or mixed-backbone analogues — may also use AEG as a reference compound or intermediate in mechanistic and structure-activity relationship studies.
Handling, Storage, and Safety Considerations
N-(2-Aminoethyl)glycine is a solid reagent at room temperature. As with all amine-containing compounds, it should be handled with appropriate personal protective equipment including gloves, safety glasses, and a lab coat. Inhalation of dust should be avoided; work in a well-ventilated area or fume hood is recommended when weighing or transferring the compound.
For storage, the reagent should be kept in a tightly sealed container in a cool, dry place away from strong oxidizers and acids, which could react with the free amine functionalities. Specific recommended storage temperatures and confirmed shelf-life data should be verified against the certificate of analysis (CoA) supplied with each lot of A124646 from Aladdin Scientific.
Researchers should consult the Safety Data Sheet (SDS) for A124646 for complete hazard classifications, first-aid measures, and disposal guidance in accordance with local regulations. Precise GHS classifications and H/P statements are lot-specific and should be confirmed from the official SDS document.
Why Choose Aladdin Scientific A124646
Aladdin Scientific supplies N-(2-Aminoethyl)glycine (SKU: A124646) as a research-grade reagent intended for use in synthetic chemistry, nucleic acid analogue research, and related life-science applications. Each lot is accompanied by a certificate of analysis detailing purity and identity confirmation by standard analytical methods.
Procurement teams will find competitive pricing and flexible pack sizes to match both exploratory research needs and larger-scale synthesis programs. Aladdin Scientific's quality control processes are designed to give researchers confidence that the reagent meets the specification required for sensitive downstream applications such as PNA monomer synthesis, where backbone purity directly affects coupling efficiency and final oligomer quality.
For technical questions about specifications, compatibility, or custom quantities of A124646, researchers and lab managers are encouraged to contact Aladdin Scientific's technical support team directly.
Frequently asked questions
What is N-(2-Aminoethyl)glycine used for in research?
N-(2-Aminoethyl)glycine is primarily used as the key backbone monomer in the synthesis of peptide nucleic acids (PNAs), synthetic nucleic acid analogues that hybridize with high affinity and specificity to complementary DNA or RNA. It is also used in coordination chemistry, bioconjugation linker development, and combinatorial chemistry as a bifunctional amine-acid building block.
How does the AEG backbone differ from a natural DNA backbone?
Unlike the negatively charged deoxyribose-phosphate backbone of natural DNA, the N-(2-aminoethyl)glycine-based PNA backbone is electrically neutral at physiological pH and is achiral. This neutral backbone eliminates electrostatic repulsion between complementary strands, resulting in PNA:DNA or PNA:RNA duplexes with higher thermal stability (higher Tm) compared with equivalent DNA:DNA duplexes of the same length and sequence.
What purity grade of A124646 is suitable for PNA monomer synthesis?
For PNA monomer synthesis, high-purity reagent grades are recommended, as backbone impurities can adversely affect coupling efficiency and the quality of the final PNA oligomer. Researchers should review the certificate of analysis for the specific lot of A124646 they intend to use. Contact Aladdin Scientific technical support for guidance on purity specifications appropriate to your application.
Is N-(2-Aminoethyl)glycine soluble in common laboratory solvents?
N-(2-Aminoethyl)glycine is soluble in water due to its zwitterionic amino acid character. Solubility in organic solvents such as DMF, DMSO, or methanol may vary and should be tested empirically or confirmed against the lot-specific CoA. When preparing stock solutions for PNA synthesis, aqueous or mixed aqueous-organic systems are typically employed.
How should A124646 be stored to maintain stability?
A124646 should be stored in a tightly sealed container in a cool, dry location, away from strong acids and oxidizing agents. The specific recommended storage temperature should be verified on the product label and certificate of analysis supplied with each lot. Always reseal the container promptly after use to prevent moisture uptake.
References
- Nielsen P.E., Egholm M., Berg R.H., Buchardt O. Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science, 1991, 254(5037): 1497-1500. doi:10.1126/science.1962210
- Egholm M., Buchardt O., Christensen L., et al. PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules. Nature, 1993, 365(6446): 566-568. doi:10.1038/365566a0
- Pellestor F., Paulasova P. The peptide nucleic acids (PNAs), powerful tools for molecular genetics and cytogenetics. European Journal of Human Genetics, 2004, 12(9): 694-700. doi:10.1038/sj.ejhg.5201226
Products are supplied for research and development use only. Not for use in humans, animals, diagnosis, or therapy.
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