FOOD CHEMISTRY
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2024
·
IF 8.5
Yu Zou,Wanshan Wang,Fengyin Duan,Wen Yun,Hong Chen,Yiping Li,Lizhu Yang
An ultrasensitive fluorescence detection strategy of chloramphenicol (CAP) was developed based on product catalysis of tetrahedral DNA framework (TDF) and fluorescent quenching of MIL-101(Fe). The product was used to catalyze the reaction. As the concentration of catalyst increased, the reaction time was significantly shorted to 21 min which was much shorter than other isothermal amplification technologies. Moreover, the multiple fluorophores of TDF and high efficient quenching ability of MIL-101(Fe) provided better performance with a linear range for CAP detecting from 1.6 pM to 80 pM and the limit of detection (LOD) as low as 0.67 pM. In addition, it also demonstrated good specificity and resistance to interference from other related antibiotics. Importantly, this strategy exhibited satisfactory relative standard deviation and recovery results for practical application, exhibiting a favorable application prospect in CAP analysis.
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JOURNAL OF MATERIALS CHEMISTRY
·
2011
·Vol. 22
·期 4
·1477-1481
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IF 5.101
Wei Tao Huang,Wan Yi Xie,Yan Shi,Hong Qun Luo,Nian Bing Li
We provide a novel, simple, and general strategy based on a DNA–graphene oxide (GO)–Fenton hybrid system for fluorescence turn-on detection of hydroxyl radicals (HO˙) and Fe2+, in which GO as a nanoquencher is utilized for reducing the background signal and simplifying procedures. Fluorescence resonance energy transfer (FRET) between GO and dye units incorporated into DNA is switched off as a result of HO˙-induced strand breakage in the single-stranded DNAs, restoring the fluorescence of the quenched fluorophores. In our assay, HO˙ is generated by Fe2+ catalyzing decomposition of hydrogen peroxide through the Fenton reaction. Therefore, switching off FRET depends on the amounts of Fe2+ and HO˙. In vitro assays with Fe2+ and HO˙ demonstrated increases in fluorescence intensity with a linear range from 10 nM to1 μM and a detection limit as low as 2.4 nM.
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ELECTROCHIMICA ACTA
·
2010
·
IF 3.325
Xianggang Liu,Xiangjin Qu,Hai Fan,Shiyun Ai,Ruixia Han
An electrochemical method for the detection of DNA hybridization using a novel electroactive, cationic, and water-soluble branched polyethyleneimine (BPEI)–cobalt(III)–phenanthroline(phen) polymeric indicator and single-stranded neutral peptide nucleic acid (PNA) probe on the Au electrode was developed. The indicator possesses some free amine groups, as well as cationic cobalt complexes in the polymer chain. It does not bind to neutral PNA capture probe alone. However, the indicator strongly interacts with the negatively charged backbone of the complementary oligonucleotide bound to the PNA probe through electrostatic interactions . The coordination spherical moieties also interact with the probe by embedding into the double-helix structure of PNA–DNA. These two interactions enable transduction of hybridization, producing a clear electrical signal in differential pulse voltammetry (DPV). The correlation against non-complementary DNA, three-base and one-base mismatch DNA was sharp, and the signal of indicator for the target DNA demonstrated a linear relationship within the concentration range of 5.0 × 10 −9 to 2.5 × 10 −7 M ( R = 0.9940) with a detection limit of 5.6 × 10 −10 M. These studies showed that the novel polymeric indicator and single-stranded PNA probe could be used to fabricate an electrochemical biosensor for DNA detection. This technique can provide an alternative route for expanding the range of detection methods available for DNA hybridization.
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JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS
·
2025
·
IF 3.1
Ye Shang,Suyi Liu,Chunxiao Liang,Tenukeguli Tuliebieke,Shujing Chen,Kunze Du,Xiaoxuan Tian,Jin Li,Jun He,Hua Jin,Yanxu Chang
Pheretima is an animal-derived traditional Chinese medicines (TCMs). The chemical quality markers of Pheretima used to distinguish different species are still ambiguous. Under this premise, a strategy integrated DNA barcoding with metabolomics is promoted for identifying Pheretima and screening distinguishable combinatorial chemical quality marker (DCQ-marker) between Pheretima aspergillum ( P. aspergillum ) and Pheretima vulgaris Chen ( P. vulgaris ). As a result, adenosine, adenine, L-phenylalanine and uridine are successfully selected as DCQ-markers between P. aspergillum and P. vulgaris . This study provides convenient strategy for quickly screening DCQ-marker between P. aspergillum and P. vulgaris . It will be meaningful for further promoting quality control on Pheretima and providing a reference for the quality evaluation of other animal-derived TCMs.
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ANALYST
·
2011
·Vol. 136
·期 21
·4480-4485
·
IF 3.913
Shujuan Xu,Yong Shao,Kun Ma,Qinghua Cui,Guiying Liu,Fei Wu,Minjie Li
DNA single-nucleotide polymorphism (SNP) detection has attracted much attention due to mutation-related diseases. Various fluorescence methods for SNP detection have been proposed and many are already in use. However, fluorescence enhancement for signal-on SNP identification without label modification still remains a challenge. Here, we find that the abasic site (AP site) in a DNA duplex can be developed as a binding pocket favorable for the occurrence of the excited-state intramolecular proton transfer (ESIPT) of a 3-hydroxyflavone, fisetin, which is used as a proof of concept for effective SNP identification. Fisetin binding at the AP site is highly selective for target thymine or cytosine facing the AP site by observation of a drastic increase in the ESIPT emission band. In addition, the target recognition selectivity based on this ESIPT process is not affected by flanking bases of the AP site. The binding selectivity of fisetin at the AP site is also confirmed by measurements of fluorescence resonance energy transfer, emission lifetime and DNA melting. The fluorescent signal-on sensing for SNP based on this fluorophore is substantially advantageous over the previously used fluorophores such as the AP site-specific signal-off organic ligands with a similar fluorescing mechanism before and after binding to DNA with hydrogen bonding interaction. We expect that this approach will be employed to develop a practical SNP detection method by locating an AP site toward a target and employing an ESIPT probe as readout.
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CHEMICAL ENGINEERING JOURNAL
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2024
·
IF 13.3
Shuanglong Tang,Na An,Jing Luan,Xiaodan Wen,Yutuo Fu,Minghui Gao,Chongshen Guo
The co-ordination properties of biomolecules with metal ions can lead to changes in their structures and functions. This work discloses that cobalt ions (Co 2+ ) can induce structural changes in DNA by coordinating with guanine and inactivate copper/zinc superoxide dismutase (Cu/Zn-SOD) by changing the secondary structure. The Co 2+ at high concentrations can suppress cell growth and induce apoptosis. Herein, we fabricate a light and tumor microenvironment (TME) dual-responsive polydopamine-coated cobalt boride (CoB@PDA) as a Co 2+ -carrying material, NIR-driven photothermal/photodynamic agent, catalase-like nano-enzyme, reactive oxygen species (ROS) moderator, and hydrogen (H 2 ) supplier. CoB@PDA with catalase-like properties can convert the H 2 O 2 at tumor site into O 2 , ·O 2 − and 1 O 2 , thus inducing oxidative stress and alleviating tumor hypoxia. Under 808 nm irradiation, CoB@PDA can induce a hyperthermia by photothermal effect and trigger photosensitization of O 2 to toxic 1 O 2 , thus achieving the photothermal therapy (PTT) and photodynamic therapy (PDT) actions. Meanwhile, decomposition of CoB@PDA in the acidic TME releases Co 2+ to inhibit the growth of residual tumor cells post phototherapy and H 2 to suppress the inflammatory response induced by phototherapy. The complete ablation of solid tumors with no side effects and recurrence indicates that CoB@PDA is promising for cancer therapy, and thus it provides valuable insights for the development of multifunctional antineoplastic agents.
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FOOD CHEMISTRY
·
2024
·
IF 8.5
Yujie Chen,Zhaode Mu,Jianli Zuo,Min Qing,Jing Zhou,Lijuan Bai
A novel aptasensor for the detection of kanamycin (KNM) was developed based on dual signal amplification through nanomaterials and DNA rolling machines. Firstly, a composite consisting of the covalent organic framework (COF), ketjen black (KB) and toluidine blue (Tb), was synthesized for signal generation. Tb molecules were loaded into the composite and combined with AuNPs to serve as tracer label. Secondly, the wDNA-loaded Fe 3 O 4 magnetic beads (wDNA@MBs) as the DNA walking legs, with cleavage by Mg 2+ -driven DNAzyme, the DNA walking legs can move along the sDNA-decorated MBs surface, converting the target KNM into numerous output DNA strand, achieving sensitive amplification. With a low detection limit of 0.66 fM and a wide linear dynamic range from 10 fM to 100 nM, this aptasensor showed good results in the detection of KNM in real samples. Therefore, we envision it can provide a useful method for KNM detection in actual samples.
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MICROCHEMICAL JOURNAL
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2024
·
IF 4.9
Jidong Tang,Ling Wang,Wenjin Ma,Ping Fu,Yanlin Zhang,Xiaoqiong Li,Xiaoqi Tao
The application of the fluorescence resonance energy transfer (FRET) strategy in the detection of ochratoxin A (OTA) is restricted by factors such as the photobleaching of fluorescent dyes, the autofluorescence of ochratoxin A (OTA), and the necessity for excitation by an external light source. The chemiluminescence resonance energy transfer (CRET) technique provides a more effective solution to this issue. In this paper, we developed a novel CRET aptasensor, based on gold nanoparticle (AuNP)-mediated CRET and Nb.BbvCI-powered DNA walker signal amplification. In the AuNPs/Capture-DNA/HRP probe, horseradish peroxidase (HRP) approached the AuNP surface, resulting in CRET. AuNPs quenched the chemiluminescence generated by HRP-catalyzed luminol. The presence of OTA induced the separation of the Walk-DNA from the aptamer and the formation of a double strand with Capture-DNA. This activated Nb.BbvCI to cleave Capture-DNA, releasing HRP and Walk-DNA. The Walk-DNA acted as a DNA walker, moving toward the adjacent Capture-DNA and initiating the next cleavage by Nb.BbvCI. Ultimately, a significant amount of HRP was released from the AuNP surface, weakening the CRET effect while generating a strong chemiluminescent signal. The CRET aptasensor had a detection limit of 2.75 nM with a linear range of 5–40 nM and was applied to detect OTA in glutinous rice.
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ANALYTICAL AND BIOANALYTICAL CHEMISTRY
·
2017
·Vol. 409
·期 28
·6677-6688
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IF 3.431
Hu Yufang,Zhang Qingqing,Xu Lihua,Wang Jiao,Rao Jiajia,Guo Zhiyong,Wang Sui
Electrochemical methods allow fast and inexpensive analysis of enzymatic activity. Here, a simple and yet efficient “signal-on” electrochemical assay for sensitive, label-free detection of DNA-related enzyme activity was established on the basis of terminal deoxynucleotidyl transferase (TdT)-mediated extension strategy. TdT, which is a template-independent DNA polymerase, can catalyze the sequential addition of deoxythymidine triphosphate (dTTP) at the 3’-OH terminus of single-stranded DNA (ssDNA); then, the TdT-yield T-rich DNA nanowires can be employed as the synthetic template of copper nanoclusters (CuNCs). Grown DNA nanowires-templated CuNCs (noted as DNA-CuNCs) were attached onto graphene oxide (GO) surface and exhibited unique electrocatalytic activity to H 2 O 2 reduction. Under optimal conditions, the proposed biosensor was utilized for quantitatively monitoring TdT activity, with the observed LOD of 0.1 U/mL. It also displayed high selectivity to TdT with excellent stability, and offered a facile, convenient electrochemical method for TdT-relevant inhibitors screening. Moreover, the proposed sensor was successfully used for BamHI activity detection, in which a new 3′-OH terminal was exposed by the digestion of a phosphate group. Ultimately, it has good prospects in DNA-related enzyme-based biochemical studies, disease diagnosis, and drug discovery.
Extraordinary TdT-generated DNA-CuNCs are synthesized and act as a novel electrochemical sensing platform for sensitive detection of TdT and BamHI activity in biological environments.
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ANALYTICAL CHEMISTRY
·
2025
·
IF 6.7
Lanlan Chen,Jingjing Lai,Siqi Dong,Wenjun Liu,Ximei Zhang,Huanghao Yang
Evaluating tumor radiosensitivity is beneficial for the prediction of treatment efficacy, customization of treatment plans, and minimization of side effects. Tracking the mitochondrial DNA (mtDNA) repair process helps to assess tumor radiosensitivity as mtDNA repair determines the fate of the cell under radiation-induced mtDNA damage. However, current probes developed to monitor levels of DNA repair enzymes suffered from complex synthesis, uncontrollable preparation, limited tumor selectivity, and poor organelle-targeting ability. Especially, the correlation between mtDNA repair activity and inherent radiosensitivity of tumors has not yet been explored. Here, we present a mitochondria-targeted DNA-based nanoprobe (TPP-Apt-tFNA) for in situ monitoring of the activity of the mtDNA repair enzyme and evaluating tumor radiosensitivity. TPP-Apt-tFNA consists of a DNA tetrahedral framework precisely modified with three functional modules on each of the three vertexes, that is, the tumor cell-targeting aptamer, the mitochondrion-targeting moiety, and the apurinic/apyrimidinic endonuclease 1 (APE1)-responsive molecule beacon. Once selectively internalized by tumor cells, the nanoprobe targeted the mitochondrion and specifically recognized APE1 to activate fluorescence, allowing the observation of mtDNA repair activity. The nanoprobe showed elevated APE1 levels in the mitochondria of tumor cells under oxidative stress. Moreover, the nanoprobe enabled the illumination of different levels of APE1-mediated mtDNA repair activity in different cell cycle phases. Furthermore, using the nanoprobe in vitro and in vivo, we found that tumor cells with high activity of mtDNA repair, which allowed them to recover from radiation-induced mtDNA lesions, had low sensitivity to radiation and an unsatisfactory radiotherapy outcome. Our work provides a new imaging tool for exploring the roles of mtDNA repair activity in diverse biological processes and for guiding tumor radiation treatment.
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Advanced Healthcare Materials
·
2024
·
IF 10
Ming-Xuan Liu,Yan-Chao Liu,Yu-Ting Cai,Ying-Ying Gu,Ya-Qi Zhu,Nan Zhang,Wei-Zhong Zhu,Yong-Hong Liu,Lei Yu,Qi-Tao Zhang,Xiao-Ling Zhang
Hypoxia can aggravate tumor occurrence, development, invasion, and metastasis, and greatly inhibit the photodynamic therapy (PDT) effect. Herein, carbon nitride (CNs)-based DNA and photosensitizer co-delivery systems (BPSCNs) with oxygen-producing functions are developed to address this problem. Selenide glucose (Seglu) is used as the dopant to prepare red/NIR-active CNs (SegluCNs). The tumor-targeting unit Bio-PEG 2000 is utilized to construct BPSCNs nanoparticles through esterification reactions. Furthermore, DNA hydrophobization is realized via mixing P53 gene with a positively charged mitochondrial-targeted near-infrared (NIR) emitting photosensitizer (MTTPY), which is encapsulated in non-cationic BPSCNs for synergistic delivery. Ester bonds in BPSCNs@MTTPY-P53 complexes can be disrupted by lipase in the liver to facilitate P53 release, upregulated P53 expression, and promoted HIF-1α degradation in mitochondria. In addition, the oxygen produced by the complexes improved the hypoxic microenvironment of hepatocellular carcinoma (HCC), synergistically downregulated HIF-1α expression in mitochondria, promoted mitochondrial-derived ferroptosis and enhanced the PDT effect of the MTTPY unit. Both in vivo and in vitro experiments indicated that the transfected P53-DNA, produced O 2 and ROS by these complexes synergistically led to mitochondrial-derived ferroptosis in hepatoma cells through the HIF-1α/SLC7A11 pathway, and completely avoiding PDT resistance caused by hypoxia, exerting a significant therapeutic role in HCC treatment.
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ANALYTICA CHIMICA ACTA
·
2024
·
IF 5.7
Manting Li,Haikun Luo,Zhao Wang,Qian Mo,Shanshan Zhong,Yu-ang Mao,Shuting Li,Xinchun Li
Background Assembling framework nucleic acid (FNA) nanoarchitectures and tuning luminescent quantum dots (QDs) for fluorescence assays represent a versatile strategy in analytical territory. Rationally, FNA constructs could offer a preferential orientation to efficiently recognize the target and improve detection sensitivity, meanwhile, regulating size-dependent multicolor emissions of QDs in one analytical setting for ratiometric fluorescence assay would greatly simplify operation procedures. Nonetheless, such FNA/QDs-based ratiometric fluorescence nanoprobes remain rarely explored. Results We designed a sensitive and signal amplification-free fluorescence aptasensor for lead ions (Pb 2+ ) that potentially cause extensive contamination to environment, cosmetic, food and pharmaceuticals. Red and green emission CdTe quantum dots (rQDs and gQDs) were facilely prepared. Moreover, silica nanosphere encapsulating rQDs served as quantitative internal reference and scaffold to anchor a predesigned FNA and DNA sandwich containing Pb 2+ binding aptamer and gQD modified DNA signal reporter. On binding of Pb 2+ , the gQD-DNA signal reporter was set free, resulting in fluorescence quenching at graphene oxide (GO) interface. Owing to the rigid structure of FNA, the fluorescence signal reporter orderly arranged at the silica nanosphere could sensitively respond to Pb 2+ stimulation. The dose-dependent fluorescence signal-off mode enabled ratiometric analysis of Pb 2+ without cumbersome signal amplification. Linear relationship was established between fluorescence intensity ratio ( I 555 / I 720 ) and Pb 2+ concentration from 10 nM to 2 μM, with detection limit of 1.7 nM (0.43 ppb), well addressing the need for Pb 2+ routine monitoring. The designed nanoprobe was applied to detection of Pb 2+ in soil, cosmetic, milk, drug, and serum samples, with the sensitivity comparable to conventional ICP-MS technique. Significance Given the programmable design of FNA and efficient recognition of target, flexible tuning of QDs emission, and signal amplification-free strategy, the present fluorescence nanoprobe could be a technical criterion for other heavy metal ions detection in a straightforward manner.
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