International Journal of Electrochemical Science
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2023
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IF 1.5
Xu Zhu,Shufang Wu,Chunlan Li,Maotian Xu,Baoxian Ye
DNA was employed in a novel way to contribute to the electroanalysis. Electrochemical oxidized DNA modified glassy carbon electrode (DNA/GCE) by potentiostatic method for Levotetrahydropalmatine (L-THP) determination was prepared. For the first time, L-THP was investigated by electrochemical sensor, and the results indicated that this voltammetric sensor exhibited a special recognition capacity towards L-THP determination. Under the optimize condition, the response peak currents had a linear relationship with the L-THP concentrations in range from 5.6×10 -5 mol L -1 to 2.8×10 -3 molL -1 with detection limit of 2.×10 -6 moi . L -1 .
研究领域:
分析化学
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生物化学
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DOI
高影响因子
ANALYST
·
2019
·Vol. 144
·期 6
·2011-2016
·
IF 4.019
Yi Fen Xie,Yun Ying Cheng,Meng Li Liu,Hong Yan Zou,Cheng Zhi Huang
Highly sensitive colorimetric detection of silver(I) ions (Ag+) at the single-particle level was developed based on the color of a gold nanoparticle (AuNP) assembly captured by dark-field microscopy (DFM) imaging. Formation of C–Ag+–C bonding between cytosines was utilized to induce interparticle coupling of AuNPs modified with single-strand DNA, resulting in a color change as the signal transduction to quantify Ag+ under DFM imaging. This method allowed visual quantitation of Ag+ in the range of 0.05 nM–250.00 nM and a detection limit of 28.8 pM was achieved. Furthermore, we demonstrated its applicability for the colorimetric detection of Ag+ in a small quantity of real samples, showing the good potential of this developed method for environmental monitoring and drug quality control.
研究领域:
分析化学
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环境科学
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药物分析
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PubMed
高影响因子
ORGANIC & BIOMOLECULAR CHEMISTRY
·
2024
·
IF 2.9
Ting Jiang,Qian Zhou,Kang-Kang Yu,Shan-Yong Chen,Kun Li
N
6
-Methyladenosine (6mA) is a well-known prokaryotic DNA modification that has been shown to play epigenetic roles in eukaryotic DNA. Accurate detection and quantification of 6mA are prerequisites for molecular understanding of the impact of 6mA modification on DNA. However, the existing methods have several problems, such as high false-positive rate, time-consuming and complex operating procedures. Chemical sensors for the selective detection of 6mA modification are rarely reported in the literature. Fluorinated phenylboronic acid combined with 19F NMR analysis is an effective method for determining DNA or RNA modification. In this study, we presented a simple and fast chemical method for labelling the 6th imino group of 6mA using a boric-acid-derived probe. Besides, the trifluoromethyl group of trifluoromethyl phenylboronic acid (2a) could detect 6mA modification through 19F NMR. Combined with this sensor system, 6mA modification could be detected well and quickly in 6 types of deoxynucleoside mixtures and DNA samples. Taken together, the method developed in the current study has potential for specific detection of 6mA in biological samples.
研究领域:
生物化学
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分子生物学
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分析化学
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PubMed
高影响因子
ACS Applied Materials & Interfaces
·
2017
·
IF 7.504
Peng Miao,Yuguo Tang,Lei Wang
Driven by the urgent need to detect trace heavy metal ions in various real water samples, this article demonstrates for the first time an electrochemical biosensor based on DNA modified Fe3O4@Au magnetic nanoparticles (NPs). Three DNA probes are designed to contain certain mismatched base pairs. One is thiolated and modified on the surface of Fe3O4@Au NPs (DNA 1). The other two probes (DNA 2 and 3) are labeled with two independent electrochemical species. Stable structures of cytosine–Ag+–cytosine and thymine–Hg2+–thymine formed in the presence of Ag+ and Hg2+ can assist the hybridization of DNA 1/DNA 2 and DNA 1/DNA 3, which locate corresponding electrochemical species onto the surface of the magnetic NPs. The achieved nanocomposites are then used as selective electrochemical probes for the detection of heavy metal ions by recording the square wave voltammetry signals. Simultaneous detection of Ag+ and Hg2+ is demonstrated without significant interference, and their individual high sensitivities are fundamentally preserved, which meet the requirements of U.S. Environmental Protection Agency (USEPA). Furthermore, the proposed method has been challenged by various real water samples. The results confirm the DNA modified magnetic NPs based sensing method may have potential applications for the monitoring of heavy metal ions in real sample analysis.
研究领域:
生物传感技术
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环境科学
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纳米材料科学
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DOI
PubMed
高影响因子
ANALYTICA CHIMICA ACTA
·
2021
·
IF 6.558
Liping Sun,Chao Li,Yong Yan,Yue Yu,Hao Zhao,Zijue Zhou,Feng Wang,Yi Feng
Single atom nanozymes (SAzymes) represent the state-of-the-art technology in nanomaterial-based catalysis, which have attracted attentions in catalysis, cancer treatment, disinfection and biosensing fields. However, numerous SAzymes suffered from low aqueous dispersion and without recognition capacity, which impeded their applications in bioanalysis . Herein, we engineered DNA onto SAzymes to obtain the DNA/SAzymes conjugates , which significantly improved the aqueous dispersion and recognition ability of SAzymes. We synthesized iron SAzymes (Fe–N–C SAzymes) as the catalytic nanomaterials, and investigated the interactions between Fe–N–C SAzymes and DNA. We compared A 15 , T 15 and C 15 adsorption of Fe–N–C SAzymes in HEPES containing 2 mM MgCl 2 . We found that 50 μg mL −1 Fe–N–C SAzymes produced nearly 100% A 15 adsorption, 90% T 15 adsorption and only 69% C 15 adsorption, indicating that adenine and thymine had higher adsorption affinity on Fe–N–C SAzymes. More importantly, DNA modification did not affect the peroxidase-like activity of Fe–N–C SAzymes and the bioactivity of the adsorbed DNA. Taking the advantage of the diblock DNA with one DNA sequence (adenine) binding to Fe–N–C SAzymes and the other DNA sequence (i.e., aptamer) binding to cancer cells, we designed Apt/Fe–N–C SAzymes for colorimetric detection of cancer cells, which offered new insights for the use of SAzymes in biomedicine .
研究领域:
生物医学
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纳米技术
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催化科学
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PubMed
高影响因子
SENSORS AND ACTUATORS B-CHEMICAL
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2015
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IF 4.097
Zhihong Zhang,Xiaoming Fu,Kunzhen Li,Ruixue Liu,Donglai Peng,Linghao He,Minghua Wang,Hongzhong Zhang,Liming Zhou
A novel DNA-modified nanocomposite of three-dimensional reduced graphene oxide and chitosan particles (CS@3D-rGO@DNA) was prepared by one-step method and used as a new electrochemical biosensing strategy to detect Hg 2+ in drinking water . This biosensor was fabricated by the chemical coordination of T-Hg 2+ -T between the T-rich oligonucleotide strands contained in the as-prepared CS@3D-rGO@DNA nanocomposite and Hg 2+ , thereby varying the electrochemical signals. The developed electrochemical biosensor exhibited high sensitivity toward the determination of Hg 2+ with a low detection limit of 0.016 nM, ranging from 0.1 nM to 10 nM. This novel biosensor also showed high selectivity, good stability, and repeatability. Hence, this proposed CS@3D-rGO@DNA-based electrochemical strategy is feasible and may offer a simple, rapid, cost-effective, highly selective, and sensitive method for Hg 2+ quantification.
研究领域:
环境科学
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生物化学
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材料科学
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高影响因子
Journal of Materials Chemistry B
·
2014
·Vol. 2
·期 21
·3263-3270
·
IF 0
Bangrong Zhuo,Yuqin Li,An Zhang,Fushen Lu,Yaowen Chen,Wenhua Gao
A solid-state electrochemiluminescence (ECL) biosensor based on a DNA-modified electrode platform that depends on the variation of π–π interaction before and after the binding of target analytes is put forward. The single-stranded DNA (ssDNA) probe was successfully assembled on the surface of a glassy carbon electrode (GCE), which was pre-modified with Ru(bpy)32+ complex and gold nanoparticles (GNPs). The ssDNA probe could strongly adsorb graphene due to the strong π–π interaction between nucleotides and graphene (GN), while in the presence of Hg2+, the conformational transformation of DNA from a single-stranded to a double-stranded structure resulted in inhibited adsorption of GN. With thymine (T)-rich ssDNA as a Hg2+ probe, we prepared the ECL biosensor by using ferrocene–graphene (Fc–GN) as a quenching unit to quench the ECL emission of Ru(bpy)32+, and the Hg2+ can be detected by quenching efficiency transformation when the Fc–GN gets away from Ru(bpy)32+. The biosensor exhibited a sensitive response to various ranges of concentration of Hg2+ with a detection limit of 18 pM. The ECL biosensor held great promise in the highly sensitive and selective detection of Hg2+ in natural water.
研究领域:
分析化学
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环境科学
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纳米技术
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生物化学
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DOI
PubMed
RSC Advances
·
2019
·Vol. 9
·期 6
·3407-3415
·
IF 3.049
Xinglu Jiang,Chenggui Zhao,Xiaobo Fan,Wei Xu,Rui Zhang,Hongbo Xu,Guoqiu Wu
Cell-free DNA (cfDNA) in blood, which stems from the fetus of pregnant women and tumor in cancer patients, has gained attention in molecular diagnosis. However, cfDNA is less stable, and its amount in the serum is extremely low; these are critical barriers for the utilization of this resource. In this study, a DNA-modified polyacrylamide hydrogel (DNA-Gel) was prepared, and a specialized device was designed to simultaneously catch, purify, concentrate, and detect targeted cfDNA by electrophoresis. We demonstrated that 20–1000 bp ssDNA and dsDNA could be caught and released by the DNA-Gel-based device with high specificity and sensitivity. Upon increasing the number of cycles and electrophoresis time, higher DNA purity and density were achieved, and the separation of serum proteins, untargeted cfDNA, and other charged molecules was promoted. As low as 10 pg μL−1 of DNA could be detected using the DNA-Gel after four cycles of concentration. We also detected 1 fg μL−1 of DNA in the serum with 16 cycles of concentration, followed by 25 PCR cycles. We also designed a device to obtain DNA from the DNA-Gel. We found that the DNA loss rate was around 50%, and A260/A280 was close to 1.7. Thus, we have designed a cost-effective and highly economical device to purify DNA at low concentrations with high specificity and selectivity.
研究领域:
分子生物学
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生物医学工程
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分析化学
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遗传学
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DOI
PubMed
高影响因子
ACS Nano
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2023
·
IF 17.1
Lulu Huang,Xiuhai Mao,Jie Li,Qian Li,Jianlei Shen,Mengmeng Liu,Chunhai Fan,Yang Tian
Spike-like nanostructures are omnipresent in natural and artificial systems. Although biorecognition of nanostructures to cellular receptors has been indicated as the primary factor for virus infection pathways, how the spiky morphology of DNA-modified nanoparticles affects their cellular uptake and intracellular fate remains to be explored. Here, we design dually emissive gold nanoparticles with varied spikiness (from 0 to 2) to probe the interactions of spiky nanoparticles with cells. We discovered that nanospikes at the nanoparticle regulated myosin IIA recruitment at the cell membrane during cellular uptake, thereby enhancing cellular uptake efficiency, as revealed by dual-modality (plasmonic and fluorescence) imaging. Furthermore, the spiky nanoparticles also exhibited facilitated endocytosis dynamics, as revealed by real-time dark-field microscopy (DFM) imaging and colorimetry-based classification algorithms. These findings highlight the crucial role of the spiky morphology in regulating the intracellular fate of nanoparticles, which may shed light on engineering theranostic nanocarriers.
研究领域:
纳米技术
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细胞生物学
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生物医学工程
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DOI
PubMed
高影响因子
FOOD CHEMISTRY
·
2018
·
IF 4.946
Nana Sun,Yuan Ding,Zhexuan Tao,Hongjie You,Xiude Hua,Minghua Wang
An upconversion fluorescence DNA probe which consists of aptamer-conjugated magnet nanoparticles (apt-MNPs) and complementary DNA-conjugated upconversion nanoparticles (cDNA-UCNPs) was developed to detect acetamiprid. Acetamiprid can specifically conjugate with the apt-MNPs to dissociate the cDNA-UCNPs from the apt-MNPs and resulted in reduced fluorescence intensity through an external magnet. The change of fluorescence intensity (△I) is positively related to the concentration of acetamiprid, which can be applied for the quantification of acetamiprid. Under optimal conditions, a linear detection range and detection limit are 0.89–114.18 μg/L and 0.65 μg/L, respectively. The probe was successfully used to detect acetamiprid in spiked paddy water, soil, pear, apple, wheat and cucumber. Average recoveries are 78.2%–103.5% with intra-day relative standard deviations (RSDs) of 2.6%–10.9% and inter-day RSDs of 4.3%–10.2%. The amounts of acetamiprid in the authentic paddy water and pear samples detected by the DNA probe are significantly correlated with that detected by high-performance liquid chromatography (HPLC).
研究领域:
分析化学
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环境科学
·
农业科学
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DOI
PubMed
高影响因子
POLYMER
·
2023
·
IF 4.6
Jianhan Ye,Xin Lu,Xiaohuan Zhao,Fen Wu,Yuanchen Dong,Qian Shi,Lijin Xu
The large-sized glass nanopipette (GN) allows for an access of large targets and show the benefits of excellent mechanical stability and reproducibility. The nanoscale DNA-decorated multilamellar cholesterol assemblies are introduced into the GN with several nanometers, and could in situ grow into a micrometer-scale aggregates under DNA signal stimulus, developing a simple and sensitive strategy for DNA detection in the micrometer-scale GN. The detection limit of target DNA reaches 2.69 fM in a GN with a diameter of up to ca. 4.76 μm.
研究领域:
纳米技术
·
生物物理学
·
分析化学
·
分子生物学
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DOI
高影响因子
ANALYTICAL CHEMISTRY
·
2022
·
IF 8.008
Jun Xiong,Ke-Ke Chen,Neng-Bin Xie,Tong-Tong Ji,Si-Yu Yu,Feng Tang,Conghua Xie,Yu-Qi Feng,Bi-Feng Yuan
DNA methylation (5-methylcytosine, 5mC) is the most prevalent epigenetic modification that is predominantly found in CG dinucleotides in mammalian genomes. In-depth investigation of the functions of 5mC heavily relies on the quantitative measurement of 5mC at single-base resolution in genomes. Here, we proposed a methyltransferase-directed labeling with APOBEC3A (A3A) deamination sequencing (MLAD-seq) method for the single-base resolution and quantitative detection of 5mC in DNA. In MLAD-seq, a mutant of DNA methyltransferase, M.MpeI-N374K, is utilized to selectively transfer a carboxymethyl group to the 5 position of cytosine in the CG dinucleotide to form 5-carboxymethylcytosine (5camC) using carboxy-S-adenosyl-l-methionine (caSAM) as the cofactor. After A3A treatment, 5camC is resistant to the deamination and base pairs with guanine. Thus, the cytosines in CG sites are read as C in sequencing. On the contrary, the methyl group in 5mC inhibits its carboxymethylcytosine by M.MpeI-N374K and therefore is readily deaminated by A3A to produce thymine that pairs with adenine and is read as T in sequencing. The differential readouts from C and 5mC in the MLAD-seq enable the single-base resolution mapping of 5mC in CG sites in DNA. With the developed MLAD-seq method, we observed the hypermethylation in the promoter region of retinoic acid receptor β (RARB) gene from human nonsmall cell lung tumor tissue. Compared to harsh reaction conditions in bisulfite sequencing that could lead to significant degradation of DNA, the whole procedure of MLAD-seq is carried out under mild conditions, which will avoid DNA damage. Thus, MLAD-seq is more suitable in the scenario where only limited input DNA is available. Taken together, the MLAD-seq offers a valuable tool for bisulfite-free, single-base resolution and quantitative detection of 5mC in limited DNA.
研究领域:
遗传学
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表观遗传学
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分子生物学
·
癌症研究
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DOI
PubMed
高影响因子
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