Amino-PEG36-CONH-PEG36-acid: Long-Chain Bifunctional PEG Linker
Amino-PEG36-CONH-PEG36-acid: Long-Chain Bifunctional PEG Linker
Amino-PEG36-CONH-PEG36-acid is a long-chain heterobifunctional polyethylene glycol reagent featuring a primary amine at one terminus and a carboxylic acid at the other, connected through an amide bond mid-chain, making it a versatile linker for bioconjugation, PROTAC assembly, and drug delivery applications.
- Product SKU
- A596370
- Chemical Name
- Amino-PEG36-CONH-PEG36-acid
- Functional Groups
- Primary amine (–NH₂) and carboxylic acid (–COOH) separated by a central amide bond
- PEG Chain Length
- 72 ethylene oxide units total (PEG36 + PEG36)
- Key Application Areas
- Bioconjugation, PROTAC linker design, antibody-drug conjugates, surface functionalization
- Reference Catalog
- BroadPharm BP-24009
What Is Amino-PEG36-CONH-PEG36-acid?
Amino-PEG36-CONH-PEG36-acid is a heterobifunctional polyethylene glycol (PEG) compound composed of two discrete PEG36 blocks joined by a central amide (–CONH–) linkage. One terminus presents a free primary amine (–NH₂) and the other terminus presents a free carboxylic acid (–COOH). This architecture provides two orthogonal reactive handles that can be selectively addressed under mild aqueous conditions.
The total chain spans 72 ethylene glycol repeat units, conferring exceptional hydrophilicity, conformational flexibility, and steric shielding. The internal amide bridge adds a stable, non-cleavable structural element that distinguishes this reagent from simple homo- or heterobifunctional PEGs lacking mid-chain functionality. The compound is catalogued by BroadPharm as BP-24009 and is available from Aladdin Scientific as SKU A596370.
Chemical Properties and Structural Features
The primary amine terminus of Amino-PEG36-CONH-PEG36-acid reacts readily with activated esters (NHS esters), epoxides, isocyanates, and aldehydes (via reductive amination), enabling covalent attachment to carboxylic acid-bearing molecules or surfaces. The carboxylic acid terminus can be activated using standard carbodiimide chemistry (e.g., EDC/NHS) to form amide bonds with amine-containing targets.
The extended PEG backbone (MW approximately 3,500–4,000 Da based on 72 EO units; exact MW should be confirmed from the product certificate of analysis) provides several biophysical benefits: reduced immunogenicity, increased aqueous solubility of hydrophobic payloads, decreased non-specific protein adsorption, and prolonged in vivo circulation half-life of conjugated biomolecules. The central amide bond is stable under physiological conditions (pH 4–9) and is not susceptible to hydrolysis under standard bioconjugation conditions.
Applications in Bioconjugation and PROTAC Research
Bioconjugation and Antibody-Drug Conjugates (ADCs): The amine–acid bifunctionality allows sequential or one-pot conjugation strategies. For example, the amine end can be coupled to a drug payload bearing an activated ester, while the acid end is coupled to a targeting antibody or protein via EDC/NHS chemistry. The long PEG spacer minimizes steric clash between the drug and the antibody binding site and improves ADC pharmacokinetics.
PROTAC Linker Design: PEG-based linkers are widely used in proteolysis-targeting chimera (PROTAC) molecules to bridge an E3 ligase ligand and a target protein ligand. Amino-PEG36-CONH-PEG36-acid provides an exceptionally long, flexible, and water-solubilizing tether suitable for PROTAC candidates requiring extended reach or improved solubility. The amine and acid termini allow straightforward incorporation into PROTAC synthesis via amide bond formation.
Surface Functionalization: The compound can be used to PEGylate nanoparticles, gold surfaces, or solid supports, installing terminal amine or acid groups for further bioorthogonal or affinity ligand attachment.
Handling, Storage, and Solubility Recommendations
Storage: Store Amino-PEG36-CONH-PEG36-acid at –20 °C under dry, inert atmosphere conditions. Protect from moisture and repeated freeze-thaw cycles to prevent hydrolytic degradation of the reactive termini. Confirm specific storage conditions on the product certificate of analysis supplied with each lot.
Solubility: The compound is expected to be freely soluble in water and common polar aprotic solvents such as DMSO and DMF, consistent with high-MW PEG reagents. Aqueous solutions should be prepared fresh and used promptly, particularly when activated derivatives are employed.
Handling Precautions: Use standard laboratory PPE (gloves, eye protection, lab coat). As with all amine-containing PEG reagents, avoid contact with aldehydes or activated electrophiles during storage. Consult the Safety Data Sheet (SDS) before use.
Frequently asked questions
What are the two reactive functional groups on Amino-PEG36-CONH-PEG36-acid and how are they used?
The compound has a primary amine (–NH₂) at one end and a carboxylic acid (–COOH) at the other end. The amine can react with activated esters, epoxides, or aldehydes, while the carboxylic acid can be activated with EDC/NHS to form amide bonds with amine-containing targets. This allows directional, heterobifunctional conjugation in one or two steps.
Why is such a long PEG chain (PEG36+PEG36) beneficial for PROTAC design?
PROTAC molecules must simultaneously engage two proteins—a target protein and an E3 ubiquitin ligase—often requiring a long, flexible linker to bridge the spatial gap between the two binding events. A PEG72 equivalent chain provides high aqueous solubility, conformational flexibility, and sufficient reach, which can improve ternary complex formation efficiency and overall PROTAC activity.
What solvents are recommended for dissolving Amino-PEG36-CONH-PEG36-acid?
High-molecular-weight PEG reagents such as this compound are generally freely soluble in water, DMSO, and DMF. Aqueous buffer solutions (e.g., PBS, pH 7.4) are commonly used for bioconjugation reactions. It is advisable to prepare stock solutions fresh and confirm solubility on the lot-specific certificate of analysis.
Is the internal amide bond in Amino-PEG36-CONH-PEG36-acid cleavable under physiological conditions?
No. Amide bonds are generally stable under physiological pH conditions (approximately pH 4–9) and are not hydrolyzed by common aqueous buffers. This makes the linker suitable for applications requiring a stable, non-cleavable tether. Researchers needing a cleavable linker should consider alternatives incorporating disulfide, hydrazone, or enzymatically labile bonds.
How should Amino-PEG36-CONH-PEG36-acid be stored to maintain its reactivity?
Store the compound at –20 °C in a sealed container under dry, inert gas (nitrogen or argon) to prevent moisture-induced side reactions at the amine terminus and degradation of the acid terminus. Avoid repeated freeze-thaw cycles and refer to the product certificate of analysis for lot-specific recommendations.
References
- BroadPharm. Amino-PEG36-CONH-PEG36-acid, catalog number BP-24009. BroadPharm product documentation.
- Veronese FM, Mero A. The impact of PEGylation on biological therapies. BioDrugs. 2008;22(5):315-329. doi:10.2165/00063030-200822050-00004
- Békés M, Langley DR, Crews CM. PROTAC targeted protein degraders: the past is prologue. Nature Reviews Drug Discovery. 2022;21:181-200. doi:10.1038/s41573-021-00371-6
Products are supplied for research and development use only. Not for use in humans, animals, diagnosis, or therapy.
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